Clustering Algorithms for Bioconductor


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Documentation for package ‘bluster’ version 1.0.0

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approxSilhouette Approximate silhouette width
BlusterParam-class The BlusterParam class
bootstrapStability Assess cluster stability by bootstrapping
clusterRows Cluster rows of a matrix
clusterRows-method Hierarchical clustering
clusterRows-method K-means clustering
clusterRows-method Graph-based clustering
clusterRows-method Two step clustering with vector quantization
HclustParam Hierarchical clustering
HclustParam-class Hierarchical clustering
KmeansParam K-means clustering
KmeansParam-class K-means clustering
makeKNNGraph Build a nearest-neighbor graph
makeSNNGraph Build a nearest-neighbor graph
mergeCommunities Merge communities from graph-based clustering
neighborPurity Compute neighborhood purity
neighborsToKNNGraph Build a nearest-neighbor graph
neighborsToSNNGraph Build a nearest-neighbor graph
NNGraphParam Graph-based clustering
NNGraphParam-class Graph-based clustering
pairwiseModularity Compute pairwise modularity
pairwiseRand Compute pairwise Rand indices
show-method The BlusterParam class
show-method Hierarchical clustering
show-method K-means clustering
show-method Graph-based clustering
show-method Two step clustering with vector quantization
TwoStepParam Two step clustering with vector quantization
TwoStepParam-class Two step clustering with vector quantization
[[-method The BlusterParam class
[[<--method The BlusterParam class